{ "_id": "6ae53f0295ca2370cc8d0bfa", "Package": "synapser", "Type": "Package", "Title": "R Language Bindings for Synapse API", "Version": "3.0.0", "Date": "2026-10-01", "Authors@R": "c(\nperson(\"Dan\", \"Lu\", role = c(\"aut\", \"cre\"), email = \"dan.lu@sagebase.org\"),\nperson(\"Tom\", \"Yu\", role = c(\"aut\"), email = \"thomas.yu@sagebase.org\"),\nperson(\"Bruce\", \"Hoff\", role = c(\"aut\"), email = \"bruce.hoff@sagebase.org\"),\nperson(\"Bryan\", \"Fauble\", role = c(\"aut\"), email = \"bryan.fauble@sagebase.org\"),\nperson(\"Sage Bionetworks\", role = c(\"cph\"))\n)", "Description": "Provides R language bindings for the 'Synapse' platform\n, a collaborative research platform\nfrom Sage Bionetworks for sharing data, tracking analyses, and\nmanaging provenance. Supports authentication, uploading and\ndownloading files, managing projects, folders, tables, views,\nannotations, and access permissions. 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Final Overview", "Key Concepts Covered", "Inheritance vs Local ACLs", "Permission Management Functions", "Best Practices", "Common Use Cases", "Research Collaboration", "Data Sharing", "Hierarchical Access", "References used in this tutorial" ], "created": "2026-10-01 17:18:53", "modified": "2026-10-21 19:56:14", "commits": 2 }, { "source": "structuring_your_project.Rmd", "filename": "structuring_your_project.html", "title": "Structuring Your Synapse Project", "engine": "knitr::rmarkdown", "headings": [ "Structuring Your Synapse Project", "Permissions Management", "Project Structure", "Top Level Folder Names", "Flattened Data Layout Example", "Hierarchy Data Layout Example", "File Views", "Creating the File View", "Uploading annotations with manifests", "An example: ELITE portal" ], "created": "2026-10-01 17:18:53", "modified": "2026-10-21 19:56:14", "commits": 2 }, { "source": "submission.Rmd", "filename": "submission.html", "title": "Submissions, SubmissionStatuses, SubmissionBundles", "engine": "knitr::rmarkdown", "headings": [ "What are Submissions?", "Key Concepts", "How Submissions Work", "Related Objects", "What You'll Learn", "Tutorial Purpose", "Prerequisites", "1. 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